STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_1663Hypothetical protein; Identified by glimmer; putative. (216 aa)    
Predicted Functional Partners:
NAMH_1662
Hypothetical protein; Identified by glimmer; putative.
       0.796
NAMH_1664
Hypothetical protein; Identified by glimmer; putative.
       0.796
NAMH_1660
Hypothetical protein; Identified by glimmer; putative.
       0.773
NAMH_1661
Identified by match to protein family HMM PF01075.
       0.773
NAMH_1665
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
       0.773
NAMH_1666
Probable polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
       0.773
fcl
GDP-L-fucose synthase 1; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.773
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.773
NAMH_1669
GDP-mannose mannosyl hydrolase; Identified by match to protein family HMM PF00293.
       0.773
NAMH_1670
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.773
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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