STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_1721Putative lipopolysaccharide heptosyltransferase III; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201. (352 aa)    
Predicted Functional Partners:
NAMH_1724
Lipopolysaccharide heptosyltransferase I; Identified by match to protein family HMM PF01075.
 
  
  0.993
rfaF
Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.
 
0.990
NAMH_1714
WabG; Identified by match to protein family HMM PF00534.
 
 
  0.990
NAMH_1719
Putative heptosyliii transferase; Identified by match to protein family HMM PF01075.
 
  
 
0.983
NAMH_1452
3-deoxy-d-manno-octulosonic-acid transferase kdta; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
 0.955
hldE
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
  
 0.938
NAMH_1722
Lipopolysaccharide core biosynthesis glycosyl transferase WaaE; Identified by match to protein family HMM PF00535.
 
  
 0.921
NAMH_1421
NADH-ubiquinone oxidoreductase; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
    
   0.878
NAMH_1720
Putative WalR protein; Identified by match to protein family HMM PF00534.
 
    0.873
NAMH_1723
Lipid A biosynthesis acyltransferase; Identified by match to protein family HMM PF03279.
 
   
 0.853
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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