STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A5Collagen type IV alpha 5 chain. (1697 aa)    
Predicted Functional Partners:
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
U3JPP6_FICAL
VWFA domain-containing protein.
     
 0.709
ITGA1
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
     
 0.709
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
     
 0.709
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.704
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
    
 0.702
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.702
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.695
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.694
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
     
 0.694
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.