STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22CSEC22 homolog C, vesicle trafficking protein; Belongs to the synaptobrevin family. (304 aa)    
Predicted Functional Partners:
GOSR2
Uncharacterized protein.
   
 0.928
BET1
t-SNARE coiled-coil homology domain-containing protein.
   
 0.928
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
    
 0.885
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.884
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
    
 0.876
USO1
USO1 vesicle transport factor.
   
 0.822
SEC24B
SEC24 homolog B, COPII coat complex component.
    
 0.815
SEC24A
SEC24 homolog A, COPII coat complex component.
    
 0.815
NAPG
NSF attachment protein gamma.
    
  0.810
BNIP1
BCL2 interacting protein 1.
    
 0.801
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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