Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NAIF1Nuclear apoptosis inducing factor 1. (320 aa)    
Predicted Functional Partners:
INTS3
Integrator complex subunit 3.
    
   0.927
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
 0.793
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
   
 0.787
GOSR2
Uncharacterized protein.
    
 0.747
ATG14
Autophagy related 14.
   
 
 0.736
U3KGI3_FICAL
Uncharacterized protein.
    
 
 0.720
ZNF276
Zinc finger protein 276.
      
 0.714
NAPG
NSF attachment protein gamma.
   
 0.705
VAMP7
Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.
   
 0.696
GOSR1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
   
 
 0.673
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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