STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPSF3Cleavage and polyadenylation specific factor 3. (647 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
0.999
WDR82
WD repeat domain 82.
   
 0.996
SSU72
Uncharacterized protein.
   
 0.996
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 
 0.993
LOC101809122
Fip1 domain-containing protein.
    
 0.992
CPSF4
Cleavage and polyadenylation specific factor 4.
   
 0.992
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.989
WDR33
Uncharacterized protein.
   
 0.987
CSTF2
Cleavage stimulation factor subunit 2.
   
 0.985
U3JL61_FICAL
Fip1 domain-containing protein.
    
 0.973
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.