STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U3K7P1_FICALUncharacterized protein. (471 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
   
 0.988
RBM17
RNA binding motif protein 17.
   
 
 0.945
U3K8J5_FICAL
Uncharacterized protein.
 
     0.927
RBM5
RNA binding motif protein 5.
   
0.742
RBM6
RNA binding motif protein 6.
   
 0.742
SF1
CCHC-type domain-containing protein.
   
 0.710
RBM25
RNA binding motif protein 25.
   
 
 0.703
DHX9
DExH-box helicase 9.
    
  0.661
SRRM3
Serine/arginine repetitive matrix 3.
   
 
 0.648
RBM39
RNA binding motif protein 39.
   
  0.643
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.