STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHG7Chromosome 12 open reading frame 74. (316 aa)    
Predicted Functional Partners:
TRADD
TNFRSF1A associated via death domain.
    
 0.669
TNFSF15
TNF superfamily member 15.
    
 0.631
WDFY3
WD repeat and FYVE domain containing 3.
    
 0.593
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.495
OPTN
Optineurin.
    
 0.458
U3JWB1_FICAL
Uncharacterized protein.
    
 0.458
CYLD
CYLD lysine 63 deubiquitinase; Belongs to the peptidase C19 family.
    
 0.454
U3K4H5_FICAL
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 0.454
LYST
Lysosomal trafficking regulator.
    
 0.434
MADD
MAP kinase activating death domain.
    
 0.430
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.