STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC17A8Solute carrier family 17 member 8. (599 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.785
SRRM4
Serine/arginine repetitive matrix 4.
   
  
 0.649
SYT2
Synaptotagmin 2.
   
 
 0.621
SYNPR
Synaptoporin.
   
 
 0.600
ADGRV1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.599
RPGRIP1L
Uncharacterized protein.
      
 0.574
SYT1
Synaptotagmin 1.
   
 
 0.573
SLC52A3
Solute carrier family 52 member 3.
      
 0.572
U3JN91_FICAL
V-SNARE coiled-coil homology domain-containing protein.
   
 
 0.540
VAMP1
Vesicle associated membrane protein 1.
   
 
 0.540
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.