STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101809744Uncharacterized protein; Belongs to the intermediate filament family. (583 aa)    
Predicted Functional Partners:
CASP6
Caspase 6; Belongs to the peptidase C14A family.
    
 0.939
LEMD3
LEM domain containing 3.
    
 0.618
LBR
Lamin B receptor.
   
 
 0.547
CASP3
Caspase 3; Belongs to the peptidase C14A family.
    
 0.503
ERMN
Uncharacterized protein.
   
  
 0.467
RBM39
RNA binding motif protein 39.
   
 0.460
TMPO
Thymopoietin.
   
 0.429
CASP7
Caspase 7; Belongs to the peptidase C14A family.
    
 0.403
CASP2
Caspase 2; Belongs to the peptidase C14A family.
    
 0.403
CENPU
Centromere protein U.
    
 0.403
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.