SHISA8 protein (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHISA8

Uncharacterized protein. (114 aa)

Predicted Functional Partners:

SNTN

0.524

CDHR3

0.510

MCIDAS

0.457

MN1

0.454

CFAP53

0.454

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDHR3	SHISA8	ENSFALP00000010739	ENSFALP00000012320	Uncharacterized protein.	Uncharacterized protein.	0.510
CFAP53	SHISA8	ENSFALP00000009402	ENSFALP00000012320	Uncharacterized protein.	Uncharacterized protein.	0.454
MCIDAS	SHISA8	ENSFALP00000011287	ENSFALP00000012320	Uncharacterized protein.	Uncharacterized protein.	0.457
MN1	SHISA8	ENSFALP00000008783	ENSFALP00000012320	MN1 proto-oncogene, transcriptional regulator.	Uncharacterized protein.	0.454
SHISA8	CDHR3	ENSFALP00000012320	ENSFALP00000010739	Uncharacterized protein.	Uncharacterized protein.	0.510
SHISA8	CFAP53	ENSFALP00000012320	ENSFALP00000009402	Uncharacterized protein.	Uncharacterized protein.	0.454
SHISA8	MCIDAS	ENSFALP00000012320	ENSFALP00000011287	Uncharacterized protein.	Uncharacterized protein.	0.457
SHISA8	MN1	ENSFALP00000012320	ENSFALP00000008783	Uncharacterized protein.	MN1 proto-oncogene, transcriptional regulator.	0.454
SHISA8	SNTN	ENSFALP00000012320	ENSFALP00000013818	Uncharacterized protein.	Sentan, cilia apical structure protein.	0.524
SNTN	SHISA8	ENSFALP00000013818	ENSFALP00000012320	Sentan, cilia apical structure protein.	Uncharacterized protein.	0.524