STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_024094Zinc finger, U1-C type. (92 aa)    
Predicted Functional Partners:
Ccrd_005062
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.992
Ccrd_011909
Small nuclear ribonucleoprotein-associated protein.
   
 0.985
Ccrd_016658
Small nuclear ribonucleoprotein-associated protein.
   
 0.985
Ccrd_011940
Like-Sm (LSM) domain-containing protein.
   
 0.984
Ccrd_003393
Small nuclear ribonucleoprotein G.
   
 0.982
Ccrd_018149
Small nuclear ribonucleoprotein G.
   
 0.982
Ccrd_012791
Nucleotide-binding, alpha-beta plait.
   
 0.976
Ccrd_003455
Small nuclear ribonucleoprotein Sm D2.
   
 0.971
Ccrd_009088
Small nuclear ribonucleoprotein Sm D2.
   
 0.971
Ccrd_007014
Armadillo-like helical.
   
 0.970
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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