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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_026603Apple-like protein. (621 aa)    
Predicted Functional Partners:
Ccrd_000836
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
  
  0.521
Ccrd_012999
Uncharacterized protein.
  
     0.500
Ccrd_007829
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.493
Ccrd_026379
Wall-associated receptor kinase galacturonan-binding domain-containing protein.
  
 
  0.481
Ccrd_024698
FLZ-type domain-containing protein.
  
     0.480
Ccrd_021763
Uncharacterized protein.
  
     0.475
Ccrd_020971
NAB domain-containing protein.
  
 
  0.474
Ccrd_015097
Armadillo-like helical.
  
 
   0.472
Ccrd_009233
Uncharacterized protein.
  
     0.471
Ccrd_022610
Uncharacterized protein.
  
    0.464
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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