Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_025693Bud13. (549 aa)    
Predicted Functional Partners:
Ccrd_003869
Nucleotide-binding, alpha-beta plait.
   
 0.980
Ccrd_022801
Forkhead-associated (FHA) domain-containing protein.
   
 0.977
Ccrd_016692
Armadillo-type fold.
   
 
 0.929
Ccrd_021738
Micro-fibrillar-associated protein 1, C-terminal.
   
 
 0.925
Ccrd_007989
RNA-processing protein, HAT helix.
   
 
 0.922
Ccrd_024035
Uncharacterized protein.
   
 
 0.921
Ccrd_016885
Uncharacterized protein.
    
 
 0.916
Ccrd_022736
Leucine-rich repeat-containing protein.
    
 
 0.914
Ccrd_007014
Armadillo-like helical.
    
 
 0.913
Ccrd_019365
Uncharacterized protein.
    
 
 0.913
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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