STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_025665SNF2-related protein. (185 aa)    
Predicted Functional Partners:
Ccrd_006655
Actin-related protein; Belongs to the actin family.
    
 0.946
Ccrd_012262
RuvB-like helicase; Belongs to the RuvB family.
    
 0.939
Ccrd_010329
Uncharacterized protein; Belongs to the actin family.
    
 0.928
Ccrd_014424
RuvB-like helicase; Belongs to the RuvB family.
   
 0.915
Ccrd_023531
YL1 nuclear, C-terminal.
    
 0.913
Ccrd_014688
Uncharacterized protein; Belongs to the actin family.
    
 0.865
Ccrd_014687
Uncharacterized protein.
    
 0.865
Ccrd_017364
Helicase, C-terminal.
  
 0.852
Ccrd_026140
ARID/BRIGHT DNA-binding domain-containing protein.
    
 0.704
Ccrd_021412
High mobility group (HMG) box domain-containing protein.
    
 0.704
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.