STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_025581Pentatricopeptide repeat-containing protein. (284 aa)    
Predicted Functional Partners:
Ccrd_012381
Nucleic acid-binding, OB-fold.
   
   0.577
Ccrd_020032
Uncharacterized protein.
  
     0.510
Ccrd_001681
Uncharacterized protein.
    
 0.506
Ccrd_018926
Histone chaperone, ASF1-like protein.
    
 0.506
Ccrd_007860
Uncharacterized protein.
  
     0.488
Ccrd_007244
Uncharacterized protein.
  
     0.461
Ccrd_006021
Uncharacterized protein.
  
 
  0.454
Ccrd_026346
Uncharacterized protein.
  
     0.453
Ccrd_025781
Ribosomal protein L18/L5.
  
     0.452
Ccrd_016554
Uncharacterized protein.
  
     0.443
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.