STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_024754Domain X. (662 aa)    
Predicted Functional Partners:
Ccrd_001132
Proton_antipo_M domain-containing protein.
  
  
 0.818
Ccrd_026319
NADH-ubiquinone oxidoreductase chain 4L/K.
   
  
 0.805
Ccrd_011279
Ribosomal protein S19, bacterial-type; Belongs to the universal ribosomal protein uS19 family.
    
 
 0.799
Ccrd_010283
NADH:ubiquinone/plastoquinone oxidoreductase.
  
  
 0.793
Ccrd_020461
Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.780
Ccrd_015504
Ribosomal protein L10e/L16.
   
 
 0.779
Ccrd_007401
Uncharacterized protein.
   
  
 0.769
Ccrd_000175
Ribosomal protein S14.
    
 
 0.767
Ccrd_026318
ATPase, F0 complex, B chain/subunit B/MI25.
   
  
 0.766
Ccrd_013345
ATPase, F0 complex, B chain/subunit B/MI25.
   
  
 0.766
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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