STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_024370AAA+ ATPase domain-containing protein. (642 aa)    
Predicted Functional Partners:
Ccrd_001840
Bet v I domain-containing protein.
      
 0.518
Ccrd_011947
Globin; Belongs to the globin family.
      
 0.516
Ccrd_016950
Phosphatidylethanolamine-binding protein PEBP.
      
 0.465
Ccrd_011487
Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
   
  
 0.450
Ccrd_016926
Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
   
  
 0.450
Ccrd_023306
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.424
Ccrd_021321
Protein kinase, ATP binding site-containing protein; Belongs to the protein kinase superfamily.
      
 0.424
Ccrd_015204
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.424
Ccrd_013611
Protein kinase domain-containing protein.
      
 0.424
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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