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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_026903Protein kinase, ATP binding site-containing protein. (699 aa)    
Predicted Functional Partners:
Ccrd_001681
Uncharacterized protein.
    
 
 0.956
Ccrd_018926
Histone chaperone, ASF1-like protein.
    
 
 0.956
Ccrd_008406
RING-type E3 ubiquitin transferase.
      
 0.739
Ccrd_024655
Protein disulfide-isomerase.
      
 0.710
Ccrd_013403
Protein disulfide-isomerase.
      
 0.710
Ccrd_002711
G-patch domain-containing protein.
      
 0.682
Ccrd_002710
Nucleotide-binding, alpha-beta plait.
      
 0.682
Ccrd_020745
Disulfide isomerase; Belongs to the protein disulfide isomerase family.
      
 0.682
Ccrd_009773
Cyclin C/H/T/L.
      
 0.682
Ccrd_022140
Disulfide isomerase; Belongs to the protein disulfide isomerase family.
      
 0.682
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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