STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_025551WD40/YVTN repeat-like-containing domain-containing protein. (444 aa)    
Predicted Functional Partners:
Ccrd_025552
Peptidase S9, prolyl oligopeptidase, catalytic domain-containing protein.
 
      0.779
Ccrd_016422
Signal peptidase I.
   
 
 0.619
Ccrd_015635
Uncharacterized protein.
   
 
 0.619
Ccrd_021772
HECT-like protein.
      
 0.558
Ccrd_021771
Armadillo-like helical.
      
 0.558
Ccrd_004718
G-protein, beta subunit.
    
 0.530
Ccrd_008199
Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller.
    
 
 0.457
Ccrd_012097
Uncharacterized protein.
    
 
 0.456
Ccrd_003808
Metalloenzyme, LuxS/M16 peptidase-like protein; Belongs to the peptidase M16 family.
    
 
 0.445
Ccrd_000984
Adenosine/AMP deaminase domain-containing protein.
   
 
 0.440
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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