STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_025755Membrane attack complex component/perforin (MACPF) domain-containing protein. (613 aa)    
Predicted Functional Partners:
Ccrd_024980
C1-like protein.
      
 0.682
Ccrd_016286
C1-like protein.
      
 0.682
Ccrd_016142
No apical meristem (NAM) protein.
  
   
 0.534
Ccrd_003243
Uncharacterized protein.
      
 0.525
Ccrd_018259
C1-like protein.
      
 0.525
Ccrd_025336
OBERON-like protein; Probable transcription factor.
  
     0.512
Ccrd_026427
Uncharacterized protein.
  
     0.504
Ccrd_025260
Lateral Root Primordium type 1, C-terminal.
  
     0.497
Ccrd_012275
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.497
Ccrd_010368
Uncharacterized protein.
  
     0.496
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.