STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009006LRAT-like domain-containing protein. (304 aa)    
Predicted Functional Partners:
Ccrd_021520
Thioredoxin-like fold.
 
 0.795
Ccrd_022357
Uncharacterized protein.
  
 0.766
Ccrd_013120
Ankyrin repeat-containing protein.
  
 0.766
Ccrd_023921
Thioredoxin-like fold.
 
 0.736
Ccrd_007420
Co-chaperone Hsc20.
  
 0.734
Ccrd_014142
Tetratricopeptide-like helical.
   
 0.692
Ccrd_002091
Heat shock protein 70 family.
   
 0.682
Ccrd_014494
Immunoglobulin E-set.
 
 
 0.679
Ccrd_011114
Tetratricopeptide-like helical.
  
 0.679
Ccrd_004882
Tetratricopeptide-like helical.
  
 0.679
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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