STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_008247tRNA/rRNA methyltransferase, SpoU. (1224 aa)    
Predicted Functional Partners:
Ccrd_000063
Oligomerization domain-containing protein.
   
 
 0.812
Ccrd_024441
Pseudouridine synthase, catalytic domain-containing protein.
   
   0.779
Ccrd_008244
Armadillo-type fold.
 
     0.763
Ccrd_013489
Ribosomal protein/NADH dehydrogenase domain-containing protein.
    
   0.760
Ccrd_017155
BP28CT domain-containing protein.
  
    0.730
Ccrd_013229
Nucleic acid-binding, OB-fold.
  
    0.703
Ccrd_020041
Uncharacterized protein.
  
  
 0.695
Ccrd_005009
Ribonuclease III domain-containing protein.
  
  
 0.683
Ccrd_000928
Ribosomal protein L21.
   
   0.683
Ccrd_022964
Ribosomal protein L21.
   
   0.683
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.