STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_007888Uncharacterized protein. (702 aa)    
Predicted Functional Partners:
Ccrd_000522
FBD-like protein.
  
     0.527
Ccrd_003305
DUF4378 domain-containing protein.
  
     0.514
Ccrd_023223
DNA-binding, integrase-type.
  
     0.511
Ccrd_000371
CYC/TB1, R domain-containing protein.
  
     0.510
Ccrd_012063
DUF4378 domain-containing protein.
  
     0.508
Ccrd_000836
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
  
     0.507
Ccrd_008545
F-box domain, cyclin-like protein.
  
     0.502
Ccrd_002585
Zinc_ribbon_12 domain-containing protein.
  
     0.501
Ccrd_010518
F-box associated domain, type 1.
  
     0.501
Ccrd_016338
CYC/TB1, R domain-containing protein.
  
     0.500
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.