STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_007448Peptidase M50. (542 aa)    
Predicted Functional Partners:
Ccrd_019130
Sister chromatid cohesion protein.
   
    0.716
Ccrd_020978
Stigma-specific protein Stig1.
      
 0.682
Ccrd_008059
SPOC domain protein.
   
    0.656
Ccrd_017134
AWS-like protein.
   
    0.614
Ccrd_022245
AWS-like protein.
   
    0.614
Ccrd_001230
ADD domain-containing protein.
   
 
 0.594
Ccrd_026575
SNF2-related protein.
   
 
 0.573
Ccrd_025664
Uncharacterized protein.
   
 
 0.573
Ccrd_006447
ATPase, nucleosome remodelling ISWI, HAND domain-containing protein.
   
 
 0.573
Ccrd_005631
Uncharacterized protein.
   
 
 0.573
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.