STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006871Essential protein Yae1, N-terminal. (429 aa)    
Predicted Functional Partners:
Ccrd_010012
Uncharacterized protein.
   
 0.759
Ccrd_007702
Basic-leucine zipper domain-containing protein.
    
 0.750
Ccrd_018260
Basic-leucine zipper domain-containing protein.
    
 0.750
Ccrd_004092
Protein kinase, ATP binding site-containing protein; Belongs to the protein kinase superfamily.
  
 
0.717
Ccrd_003952
Protein kinase, ATP binding site-containing protein; Belongs to the protein kinase superfamily.
  
 
0.711
Ccrd_018277
Protein-tyrosine/Dual specificity phosphatase.
    
 0.705
Ccrd_018278
Protein-tyrosine/Dual specificity phosphatase.
    
 0.705
Ccrd_018279
Uncharacterized protein.
    
 0.705
Ccrd_009611
Glutamate dehydrogenase, NAD-specific.
    
 0.705
Ccrd_016883
Protein kinase, ATP binding site-containing protein; Belongs to the protein kinase superfamily.
  
 
0.690
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.