STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006578DNA-binding, integrase-type. (249 aa)    
Predicted Functional Partners:
Ccrd_022826
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.788
Ccrd_014097
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.757
Ccrd_021667
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.757
Ccrd_009129
DNA-binding, integrase-type.
      
 0.680
Ccrd_018107
Uncharacterized protein.
  
   
 0.672
Ccrd_018556
Chromo domain-containing protein.
    
 0.652
Ccrd_017279
Uncharacterized protein.
    
 0.652
Ccrd_017280
Uncharacterized protein.
    
 0.652
Ccrd_013173
Chromo domain-containing protein.
    
 0.652
Ccrd_021936
Chromo domain-containing protein.
    
 0.652
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.