STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006415Ribosomal protein S11. (336 aa)    
Predicted Functional Partners:
Ccrd_003823
Uncharacterized protein.
    
 
 0.920
Ccrd_017234
Ribosomal protein S11.
   
  0.901
Ccrd_000928
Ribosomal protein L21.
   
   0.784
Ccrd_005742
Nucleotide-binding, alpha-beta plait.
   
   0.784
Ccrd_003858
Ribosomal protein S18.
   
   0.783
Ccrd_018522
Ribosomal protein L15, bacterial-type.
   
   0.779
Ccrd_025004
Ribosomal protein L18/L5.
   
   0.770
Ccrd_007679
Pentatricopeptide repeat-containing protein.
   
   0.770
Ccrd_004229
Ribosomal protein S6.
   
   0.770
Ccrd_022480
Pentatricopeptide repeat-containing protein.
   
   0.770
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.