STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006132SP-RING-type domain-containing protein. (495 aa)    
Predicted Functional Partners:
Ccrd_024809
SUMO-conjugating enzyme Ubc9.
    
 0.912
Ccrd_019036
SUMO-conjugating enzyme Ubc9.
    
 0.912
Ccrd_006925
Acid phosphatase/vanadium-dependent haloperoxidase-related protein.
    
 0.801
Ccrd_019422
Small ubiquitin-related modifier, SUMO.
    
 0.801
Ccrd_016859
Small ubiquitin-related modifier, SUMO.
    
 0.801
Ccrd_009289
Small ubiquitin-related modifier, SUMO.
    
 0.801
Ccrd_007027
Small ubiquitin-related modifier, SUMO.
    
 0.801
Ccrd_004807
E3 SUMO-protein ligase Nse2 (Mms21).
    
 
 0.698
Ccrd_024900
Ku70.
    
 0.640
Ccrd_018047
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 
 0.627
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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