STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006029Protein transport protein sec16. (1458 aa)    
Predicted Functional Partners:
Ccrd_007873
G-protein beta WD-40 repeat-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.958
Ccrd_000650
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.958
Ccrd_009345
Gelsolin domain-containing protein.
   
 0.926
Ccrd_003976
Gelsolin domain-containing protein.
   
 0.926
Ccrd_020550
Sec23/Sec24 beta-sandwich.
   
 0.926
Ccrd_026600
Sec23/Sec24, helical domain-containing protein.
   
 0.901
Ccrd_007318
Sec23/Sec24, helical domain-containing protein.
   
 0.901
Ccrd_009969
Sec23/Sec24 beta-sandwich.
   
 0.901
Ccrd_009170
Gelsolin domain-containing protein.
   
 0.901
Ccrd_024184
Sec16_C domain-containing protein.
   
 0.843
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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