STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_006000HD-ZIP protein, N-terminal. (322 aa)    
Predicted Functional Partners:
Ccrd_011868
Lateral organ boundaries domain-containing protein.
  
   
 0.821
Ccrd_000504
Homeodomain-containing protein.
      
 0.713
Ccrd_000953
Homeodomain-containing protein.
      
 0.713
Ccrd_013744
Lateral organ boundaries domain-containing protein.
  
   
 0.571
Ccrd_016948
Homeodomain-containing protein.
      
 0.571
Ccrd_007447
Lateral organ boundaries domain-containing protein.
  
     0.476
Ccrd_016689
Lateral organ boundaries domain-containing protein.
  
   
 0.473
Ccrd_014599
Lateral organ boundaries domain-containing protein.
  
     0.463
Ccrd_000925
Histidine phosphatase superfamily, clade-1.
      
 0.463
Ccrd_004780
X8-like protein.
  
     0.462
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.