STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005583A1 cistron-splicing factor, AAR2. (264 aa)    
Predicted Functional Partners:
Ccrd_023741
JAB1/Mov34/MPN/PAD-1.
    
 
 0.989
Ccrd_004207
Tr-type G domain-containing protein.
    
 
 0.985
Ccrd_012975
SGT1-like protein.
    
 
 0.963
Ccrd_004520
Uncharacterized protein.
   
 
 0.932
Ccrd_013812
Uncharacterized protein.
    
 
 0.904
Ccrd_003340
DnaJ domain-containing protein.
    
 
 0.878
Ccrd_014494
Immunoglobulin E-set.
    
 
 0.878
Ccrd_009358
DnaJ domain-containing protein.
    
 
 0.878
Ccrd_016056
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
    
 
 0.859
Ccrd_002186
DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Belongs to the DEAD box helicase family.
    
 
 0.859
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.