STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005387Photosystem II PsbO, manganese-stabilising. (330 aa)    
Predicted Functional Partners:
Ccrd_022309
Photosystem II cytochrome b559, alpha subunit.
    
 0.982
Ccrd_020689
Photosystem II PsbQ, oxygen evolving complex.
   
 0.980
Ccrd_014952
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 0.969
Ccrd_002113
Mog1/PsbP, alpha/beta/alpha sandwich.
   
 0.965
Ccrd_000338
Mog1/PsbP, alpha/beta/alpha sandwich.
   
 0.965
Ccrd_025181
Photosynthetic reaction centre, L/M.
  
 
 0.951
Ccrd_017328
Photosynthetic reaction centre, L/M.
  
 
 0.951
Ccrd_002969
Photosynthetic reaction centre, L/M.
  
 
 0.945
Ccrd_003937
Photosystem II PsbX.
   
 0.943
Ccrd_020576
Photosystem II PsbX.
   
 0.943
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.