STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005360Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (513 aa)    
Predicted Functional Partners:
Ccrd_015257
Aldehyde dehydrogenase, conserved site-containing protein.
  
 
 0.947
Ccrd_008777
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
   
 0.944
Ccrd_006444
Metridin-like ShK toxin.
     
 0.916
Ccrd_017618
Oxoglutarate/iron-dependent dioxygenase.
     
 0.916
Ccrd_005495
Fe2OG dioxygenase domain-containing protein.
     
 0.912
Ccrd_012482
Oxoglutarate/iron-dependent dioxygenase.
     
 0.909
Ccrd_025995
Oxoglutarate/iron-dependent dioxygenase.
     
 0.902
Ccrd_005697
Oxoglutarate/iron-dependent dioxygenase.
     
 0.902
Ccrd_012869
Oxoglutarate/iron-dependent dioxygenase.
     
 0.902
Ccrd_012648
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
  
 
0.901
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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