STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005237Ubiquitin-conjugating enzyme, active site-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)    
Predicted Functional Partners:
Ccrd_009434
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.985
Ccrd_000826
E3 ubiquitin protein ligase.
    
 0.962
Ccrd_010197
Molybdenum cofactor biosynthesis, MoeB; Belongs to the ubiquitin-activating E1 family.
   
 0.911
Ccrd_003843
Molybdenum cofactor biosynthesis, MoeB; Belongs to the ubiquitin-activating E1 family.
   
 0.911
Ccrd_000130
Ubiquitin-conjugating enzyme, active site-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.900
Ccrd_008306
Ribosomal protein S27a.
    
 0.880
Ccrd_002292
Ribosomal protein S27a.
    
 0.880
Ccrd_000534
F-box domain, cyclin-like protein.
   
 0.844
Ccrd_021772
HECT-like protein.
    
 0.802
Ccrd_021771
Armadillo-like helical.
    
 0.802
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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