STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004501Transmembrane protein 194. (427 aa)    
Predicted Functional Partners:
Ccrd_023437
Uncharacterized protein.
  
     0.497
Ccrd_011807
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.460
Ccrd_012761
RNA-binding, CRM domain-containing protein.
  
     0.443
Ccrd_018723
Uncharacterized protein.
    
 0.425
Ccrd_011376
Uncharacterized protein.
    
 0.425
Ccrd_020910
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
    
 0.425
Ccrd_016061
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
    
 0.425
Ccrd_021082
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.423
Ccrd_004826
1,3-beta-glucan synthase subunit FKS1-like, domain-1.
  
  
 0.412
Ccrd_008541
DOG1 domain-containing protein.
  
     0.405
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.