STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004361GDP-fucose protein O-fucosyltransferase. (478 aa)    
Predicted Functional Partners:
Ccrd_024536
Uncharacterized protein.
  
     0.535
Ccrd_008482
Uncharacterized protein.
  
     0.534
Ccrd_022202
DOG1 domain-containing protein.
  
     0.531
Ccrd_025525
Uncharacterized protein.
  
     0.530
Ccrd_026404
Lateral organ boundaries domain-containing protein.
  
     0.529
Ccrd_012374
Rad60-SLD_2 domain-containing protein.
  
     0.529
Ccrd_018566
Uncharacterized protein.
  
     0.528
Ccrd_000457
X8-like protein.
  
     0.526
Ccrd_013331
X8-like protein.
  
     0.526
Ccrd_000908
Uncharacterized protein.
  
     0.525
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.