STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004251Uncharacterized protein. (173 aa)    
Predicted Functional Partners:
Ccrd_003629
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
   0.897
Ccrd_008833
DNA recombination and repair protein Rad51, C-terminal.
    
 
 0.671
Ccrd_020174
AAA+ ATPase domain-containing protein; Belongs to the RecA family.
    
 
 0.671
Ccrd_009971
Armadillo-like helical.
      
 0.667
Ccrd_009169
Armadillo-type fold.
      
 0.667
Ccrd_014740
Uncharacterized protein family UPF0363.
      
 0.667
Ccrd_009777
DNA recombination and repair protein Rad51, C-terminal.
    
 
 0.608
Ccrd_026513
Uncharacterized protein.
    
 
 0.604
Ccrd_023649
Uncharacterized protein.
      
 0.584
Ccrd_020795
SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family.
    
 
 0.541
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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