STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004301UbiA prenyltransferase family. (346 aa)    
Predicted Functional Partners:
Ccrd_015501
Uncharacterized protein.
  
 
 0.818
Ccrd_022930
Aromatic-ring hydroxylase-like protein.
  
 
 0.803
Ccrd_004543
Uncharacterized protein.
    
 0.798
Ccrd_012263
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical.
    
 0.770
Ccrd_017339
Isopentenyl-diphosphate delta-isomerase, type 1.
  
 
 0.748
Ccrd_013700
Isopentenyl-diphosphate delta-isomerase, type 1.
  
 
 0.748
Ccrd_006939
Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal.
     
 0.678
Ccrd_007271
4-hydroxyphenylpyruvate dioxygenase.
     
 0.664
Ccrd_007270
Uncharacterized protein.
     
 0.664
Ccrd_012320
4-hydroxyphenylpyruvate dioxygenase.
     
 0.664
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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