STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004284Ribosomal protein L13 domain-containing protein. (72 aa)    
Predicted Functional Partners:
Ccrd_000534
F-box domain, cyclin-like protein.
  
 0.978
Ccrd_005523
Nucleotide-binding, alpha-beta plait.
  
 0.958
Ccrd_012381
Nucleic acid-binding, OB-fold.
  
 0.957
Ccrd_004732
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.955
Ccrd_022658
Ribosomal_L2_C domain-containing protein.
  
 0.950
Ccrd_019471
Nucleic acid-binding, OB-fold.
  
 0.950
Ccrd_007767
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.945
Ccrd_006297
Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.945
Ccrd_003963
Ribosomal protein S16.
  
 
 0.945
Ccrd_002813
Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.945
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.