STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_003985Bacterial transferase hexapeptide repeat-containing protein. (185 aa)    
Predicted Functional Partners:
Ccrd_000510
Bacterial transferase hexapeptide repeat-containing protein.
 
 
 0.985
Ccrd_004505
FabA domain-containing protein.
  
  
 0.975
Ccrd_019902
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ.
  
  
 0.975
Ccrd_019660
Glycosyl transferase, family 19.
 
  
 0.921
Ccrd_001709
Ribosomal protein S5 domain 2-type fold.
 
   
 0.870
Ccrd_012513
3-deoxy-8-phosphooctulonate synthase.
 
   
 0.846
Ccrd_021836
3-deoxy-D-manno-octulosonic-acid transferase, N-terminal.
 
   
 0.843
Ccrd_012000
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.834
Ccrd_019428
Tetraacyldisaccharide 4'-kinase.
  
   
 0.818
Ccrd_016917
Dihydrodipicolinate reductase, bacterial/plant.
  
  
 0.778
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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