STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_003330Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (161 aa)    
Predicted Functional Partners:
Ccrd_012381
Nucleic acid-binding, OB-fold.
   
 0.991
Ccrd_004732
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.988
Ccrd_000534
F-box domain, cyclin-like protein.
   
 0.984
Ccrd_025309
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.979
Ccrd_004229
Ribosomal protein S6.
   
 
 0.977
Ccrd_003963
Ribosomal protein S16.
   
 
 0.977
Ccrd_000175
Ribosomal protein S14.
  
 0.977
Ccrd_009195
Ribosomal protein L33.
  
 
 0.977
Ccrd_004564
Nucleic acid-binding, OB-fold; Belongs to the universal ribosomal protein uS17 family.
  
 0.975
Ccrd_013425
Nucleic acid-binding, OB-fold; Belongs to the universal ribosomal protein uS17 family.
  
 0.975
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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