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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_003419SET domain-containing protein. (196 aa)    
Predicted Functional Partners:
Ccrd_010964
WD40 repeat-containing protein.
    
 0.962
Ccrd_011904
JmjC domain-containing protein.
   
 0.951
Ccrd_017208
Polycomb protein, VEFS-Box.
   
 0.881
Ccrd_014044
VEFS-Box domain-containing protein.
   
 0.881
Ccrd_011545
Polycomb protein, VEFS-Box.
   
 0.881
Ccrd_009180
Uncharacterized protein.
    
 0.753
Ccrd_021294
B30.2/SPRY domain-containing protein.
    
 0.741
Ccrd_005795
WD40 repeat-containing protein.
   
 0.725
Ccrd_026664
Uncharacterized protein.
    
 0.706
Ccrd_001885
G-protein beta WD-40 repeat-containing protein.
    
 0.706
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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