STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_002513AT hook-like protein. (286 aa)    
Predicted Functional Partners:
Ccrd_020473
Uncharacterized protein.
  
     0.449
Ccrd_004749
Lateral Root Primordium type 1, C-terminal.
  
     0.439
Ccrd_020405
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.434
Ccrd_018344
Zinc finger, C2H2.
  
     0.428
Ccrd_005313
Transcription factor, TCP.
  
     0.427
Ccrd_007230
Transcription factor, TCP.
  
     0.422
Ccrd_006128
Uncharacterized protein.
  
     0.421
Ccrd_018325
Zinc finger, C2H2.
  
     0.413
Ccrd_004992
Uncharacterized protein.
  
     0.407
Ccrd_022697
Uncharacterized protein.
  
     0.406
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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