STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_002523Mur ligase, central. (691 aa)    
Predicted Functional Partners:
Ccrd_008141
Glycosyl transferase, family 4.
  
 
 0.990
Ccrd_012177
Formate-tetrahydrofolate ligase, FTHFS.
    
 0.850
Ccrd_021507
Uncharacterized protein.
    
 0.850
Ccrd_020393
Diacylglycerol glucosyltransferase, N-terminal.
  
 0.813
Ccrd_009894
Diacylglycerol glucosyltransferase, N-terminal.
  
 0.813
Ccrd_006301
Diacylglycerol glucosyltransferase, N-terminal.
  
 0.813
Ccrd_024884
S-adenosyl-L-methionine-dependent methyltransferase, MraW.
  
  
 0.791
Ccrd_020353
Cdk-activating kinase assembly factor MAT1/Tfb3.
   
 
 0.782
Ccrd_012132
Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.
    
 0.751
Ccrd_022787
Nucleic acid-binding, OB-fold.
   
 
 0.745
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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