STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_001365Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (332 aa)    
Predicted Functional Partners:
Ccrd_011989
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
  
 0.962
Ccrd_017339
Isopentenyl-diphosphate delta-isomerase, type 1.
  
 
 0.955
Ccrd_022930
Aromatic-ring hydroxylase-like protein.
  
 0.953
Ccrd_015501
Uncharacterized protein.
  
 0.953
Ccrd_007121
Squalene/phytoene synthase.
  
 0.916
Ccrd_001280
Farnesyl-diphosphate farnesyltransferase.
  
 0.916
Ccrd_012944
Squalene/phytoene synthase.
  
 0.916
Ccrd_004817
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
0.912
Ccrd_012076
Cytochrome P450.
     
  0.900
Ccrd_020093
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 
0.892
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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