Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccrd_001136Protein kinase, catalytic domain-containing protein. (178 aa)    
Predicted Functional Partners:
Ccrd_019965
Pinin/SDK/MemA protein.
   
  0.923
Ccrd_000089
Nucleotide-binding, alpha-beta plait.
   
  0.922
Ccrd_007014
Armadillo-like helical.
   
 
 0.858
Ccrd_016036
Nop domain-containing protein.
    
 
 0.797
Ccrd_023741
JAB1/Mov34/MPN/PAD-1.
    
 
 0.781
Ccrd_004207
Tr-type G domain-containing protein.
    
 
 0.749
Ccrd_002166
FF domain-containing protein.
   
 
  0.748
Ccrd_005542
Uncharacterized protein.
   
 
  0.748
Ccrd_012622
Like-Sm (LSM) domain-containing protein.
    
 
 0.682
Ccrd_003286
PWI domain-containing protein.
   
 
 0.678
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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