Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Ccrd_001054Concanavalin A-like lectin/glucanase, subgroup. (677 aa)    
Predicted Functional Partners:
Ccrd_018001
Glycoside hydrolase, catalytic domain-containing protein; Belongs to the glycosyl hydrolase 17 family.
      
 0.656
Ccrd_022357
Uncharacterized protein.
    
 0.642
Ccrd_013120
Ankyrin repeat-containing protein.
    
 0.642
Ccrd_016098
Pentatricopeptide repeat-containing protein.
    
 0.620
Ccrd_006870
Malectin_like domain-containing protein.
    
 0.613
Ccrd_005050
Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.609
Ccrd_019557
HAD-like domain-containing protein.
    
   0.587
Ccrd_015709
Cupredoxin.
    
 0.543
Ccrd_001495
Uncharacterized protein.
      
 0.533
Ccrd_009946
Early nodulin 93 ENOD93 protein.
      
 0.533
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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