STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_000836Myc-type, basic helix-loop-helix (BHLH) domain-containing protein. (356 aa)    
Predicted Functional Partners:
Ccrd_012925
Band 4.1 domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.811
Ccrd_021081
IQ motif, EF-hand binding site-containing protein.
  
 0.644
Ccrd_015360
Uncharacterized protein.
  
 
 0.632
Ccrd_025529
Ankyrin repeat-containing protein.
   
 0.620
Ccrd_011916
Sec8 exocyst complex component specific domain-containing protein.
    
 0.579
Ccrd_005321
Malectin_like domain-containing protein.
  
  0.575
Ccrd_010183
Mannose-binding lectin.
  
  0.572
Ccrd_007477
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.569
Ccrd_021425
Small GTPase superfamily, ARF/SAR type; Belongs to the small GTPase superfamily. Arf family.
    
 0.565
Ccrd_015746
Uncharacterized protein.
  
 
  0.564
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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