STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_000126Uncharacterized protein. (861 aa)    
Predicted Functional Partners:
Ccrd_005830
Diacylglycerol acyltransferase.
    
 
 0.594
Ccrd_012922
Diacylglycerol acyltransferase.
    
 
 0.594
Ccrd_009366
Uncharacterized protein.
  
     0.517
Ccrd_008155
ABC1 domain-containing protein.
  
     0.515
Ccrd_019953
Uncharacterized protein.
  
     0.512
Ccrd_000704
Citron-like protein.
  
     0.507
Ccrd_003930
DENN domain-containing protein.
  
     0.496
Ccrd_000061
Uncharacterized protein.
  
     0.492
Ccrd_009258
Uncharacterized protein.
  
     0.490
Ccrd_009605
Uncharacterized protein.
  
     0.489
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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